Description: The Molecular Signatures Database (MSigDB) is a collection of annotated gene sets for use with GSEA software. From this web site, you can. Search for gene sets by keyword. Browse gene sets by name or collection. Examine a gene set and its annotations. See, for example, the GO_NOTCH_SIGNALING_PATHWAY gene set page.
2. MSigDB - omicX - omictools.com
Description: Gathers annotated sets of genes involved in biochemical pathways, signaling cascades, expression profiles from research publications, and other biological concepts. MSigDB is a database to supply gene sets for Gene Set Enrichment Analysis (GSEA). Gene sets in this repository are lists of genes (in no particular order, each gene occurs only once in the set) with annotations and links to ...
3. License Terms for MSigDB Gene Sets and GSEA software
Description: MSigDB v6.0 and above are available under a Creative Commons style license, plus additional terms for some gene sets. The full license terms are available here. Prior versions of MSigDB (v5.2 and earlier) Releases of MSigDB v5.2 and earlier are available under a single user license agreement for internal research purposes.
4. Contact - gsea-msigdb.org
Description: MSigDB database v6.2 updated July 2018 GSEA/MSigDB web site v6.3 released January 2018
5. GSEA User Guide - gsea-msigdb.org
Description: Use the Browse MSigDB page to explore the gene sets and to export the gene sets of interest to gene set files that can be used with the gene set enrichment analysis. To display the Browse MSigDB page, click the Browse MSigDB icon in the GSEA main window. To display the latest gene sets on the Browse MSigDB page, click the Load database button.
6. GitHub - GSEA-MSigDB/gsea-desktop: Gene Set Enrichment ...
Description: Feb 16, 2018 · Introduction. Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states (e.g. phenotypes). See the GSEA website for more details.. GSEA Desktop is a free genomic analysis program written in the Java(tm) language implementing the …
7. Molecular signatures database (MSigDB) 3.0
Description: Jun 15, 2011 · (iii) MSigDB gene sets are acquired both through manual curation and by automatic computational means, whereas other databases emphasize only one of these approaches. (iv) Finally, MSigDB contains the largest number of gene sets overall. The initial MSigDB database, released in 2005 with GSEA software, contained 1325 sets.
8. GSEA User Guide - gsea-msigdb.org
Description: GSEA User Guide - gsea-msigdb.org
9. GSEA | Downloads
Description: 'Collapsed' refers to datasets whose identifiers (i.e Affymetrix probe set ids) have been replaced with symbols. In this process, all probe sets that map to a particular gene are summarized into a single expression vector by picking the maximum expression value in each sample. A utility to do this is included in the GSEA java software.