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1. Molecular Signatures Database - GSEA-MSigDB
gsea-msigdb.org
Link: https://www.gsea-msigdb.org/gsea/msigdb
Description: The Molecular Signatures Database (MSigDB) is a resource of tens of thousands of annotated gene sets for use with GSEA software, divided into Human and Mouse collections. From this web site, you can. Examine a gene set and its annotations. See, for example, the HALLMARK_APOPTOSIS human gene set page. Browse gene sets by name or collection.
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2. GSEA-MSigDB
gsea-msigdb.org
Link: http://gsea-msigdb.org/
Description: Explore the Molecular Signatures Database (MSigDB), a collection of annotated gene sets for use with GSEA software. View documentation describing GSEA and MSigDB. View guidelines for using RNA-seq datasets with GSEA.
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3. MSigDB - Database Commons - National Genomics Data Center
cncb.ac.cn
Link: https://ngdc.cncb.ac.cn/databasecommons/database/id/1077
Description: Jan 1, 2016 · The Molecular Signatures Database (MSigDB) is one of the most widely used knowledge base repositories of annotated sets of genes involved in biochemical pathways, signaling cascades, expression profiles from research publications, and other biological concepts. Here we provide an overview of MSigDB and its online analytical tools.
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4. GSEA | MSigDB | Human MSigDB Collections
gsea-msigdb.org
Link: https://www.gsea-msigdb.org/gsea/msigdb/collections.jsp
Description: The 34550 gene sets in the Human Molecular Signatures Database (MSigDB) are divided into 9 major collections, and several subcollections. See the table below for a brief description of each, and the Human MSigDB Collections: Details and …
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5. GSEA | MSigDB | Browse Human Gene Sets
gsea-msigdb.org
Link: https://www.gsea-msigdb.org/gsea/msigdb/genesets.jsp
Description: GSEA | MSigDB | Browse Human Gene Sets. Browse Human Gene Sets. Gene sets starting with A. Click on a gene set name to view its gene set page. AAACCAC_MIR140. AAAGACA_MIR511. AAAGGAT_MIR501. AAAGGGA_MIR204_MIR211. AAANWWTGC_UNKNOWN. AAAYRNCTG_UNKNOWN. AAAYWAACM_HFH4_01. AACATTC_MIR4093P. …
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6. MSigDB SQLite Database - GSEA-MSigDB Documentation
gsea-msigdb.org
Link: https://docs.gsea-msigdb.org/MSigDB/MSigDB_SQLite_Database/
Description: MSigDB SQLite Database. Introduction#. With the release of MSigDB 2023.1 we have created a new SQLite database for the fully annotated gene sets in both the Human (2023.1.Hs) and the Mouse (2023.1.Ms) resources. Each ships as a single-file database usable with any compliant SQLite client. No other downloads are necessary.
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7. The Molecular Signatures Database (MSigDB) hallmark gene set …
nih.gov
Link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4707969/
Description: Dec 12, 2015 · The Molecular Signatures Database (MSigDB) is one of the most widely used and comprehensive databases of gene sets for performing gene set enrichment analysis. Since its creation, MSigDB has grown beyond its roots in metabolic disease and cancer to include >10,000 gene sets.
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8. GSEA User Guide - GSEA-MSigDB Documentation
gsea-msigdb.org
Link: https://docs.gsea-msigdb.org/GSEA/GSEA_User_Guide/
Description: MSigDB, the Molecular Signature Database. This database provides curated gene sets for use with the gene set enrichment analysis. Each gene set is described by a gene set page. Publications. The website provides a link to the Gene Set Enrichment Analysis PNAS paper. Array annotation files.
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9. GSEA-MSigDB Documentation
gsea-msigdb.org
Link: https://docs.gsea-msigdb.org/
Description: GSEA User Guide. FAQ. Data Formats. GSEA and RNA-Seq. Release Notes. GSEA 4.3.x. GSEA 4.2.x. GSEA 4.1.x. GSEA 4.0.x. GSEA 3.0. GSEA 2.2.x. GSEA 2.1.0. GSEA 2.0.x. GSEA 1.0. MSigDB. FAQ. MSigDB SQLite Database. Release Notes. MSigDB 2023.2.Hs. MSigDB 2023.2.Mm. MSigDB 2023.1.Hs. MSigDB 2023.1.Mm. MSigDB 2022.1.Hs. MSigDB …
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10. GSEA | MSigDB | Mouse MSigDB Collections
gsea-msigdb.org
Link: https://www.gsea-msigdb.org/gsea/msigdb/mouse/collections.jsp
Description: The 16090 gene sets in the Mouse Molecular Signatures Database (MSigDB) are divided into 6 major collections, and several subcollections. See the table below for a brief description of each, and the Mouse MSigDB Collections: Details and Acknowledgments page …